What does the Summary Statistics file look like? |
|
The first few lines in the Summary Statistics file normally begin with a
#
which indicates additional meta-information such as number of samples, which phenotype and algorithm was used, and others.
The line beginning with
>
contains the column information.
#n_samples=176
#experiment_name=Experiment_6
#phenotype_name=Leaf_serr_16
#phenotype_id=91
#algorithm_name=linear
#snp_encoding=additive
#phenotype_transformation=none
#principal_components=0
>CHR Positions P-Value TestStatistic Beta0 SEBeta0 Beta1 SEBeta1 MAF SNP-Hash
Chr3 1387 0.00001 -0.00429 0.6718 0.032667 -7.11E-17 0.038305596 0.1818 11122
...