easyGWAS - View results

Brief Summary

Experiment Type:

Genome-wide Association Study

Species:

Arabidopsis thaliana

Dataset:

AtPolyDB (call method 75, Horton et al.)

Phenotype:

Bs CFU2 (ID: AT_P_70)

Algorithm:

EMMAX

Parameters:

Update multiple testing correction method
Update significance level α for correction
Show SNPs with a minor allele frequency less or equal than:
Show top x% of all p-values (be careful: fast internet-connection required)

Display genes in zoomed Manhattan-plots
Use only unique SNPs for Bonferroni threshold:
Plot unique SNPs only (only keep one copy of identical SNPs):

Click on a SNP to access a detailed SNP view with additional annotations, LD plots and more!
Click on any position in the Manhattan plot, hold the mouse button and move the mouse to the right to zoom into a region of interest!

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