Brief Summary
Experiment Type:
Genome-wide Association Study
Species:
Pristionchus pacificus
Dataset:
Linking genotype and phenotype in P. pacificus (McGaughran et. al.)
Phenotype:
pH 20 5 (ID: PP5P0)
Algorithm:
EMMAX
Parameters:
MAF:0.1
SNP Encoding:Additive
Transformation:SQRT
Use unique SNPs only (only keep one copy of SNPs with the same encoding):

QQ-Plot for all SNPs Show all chromosomes

QQ-Plot for chromosome I

QQ-Plot for chromosome II

QQ-Plot for chromosome III

QQ-Plot for chromosome IV

QQ-Plot for chromosome Un

QQ-Plot for chromosome V

QQ-Plot for chromosome X

easyGWAS is a web application provided by the Machine Learning and Systems Biology Research Department

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