easyGWAS - Detailed SNP View

Brief Summary

Experiment Type:

Genome-wide Association Study

Species:

Arabidopsis thaliana

Dataset:

AtPolyDB (call method 75, Horton et al.)

Phenotype:

avrRpm1 (ID: AT_P_33)

Algorithm:

EMMAX

Parameters:

Detailed SNP View (Chr3: 2227817)

« Back to Manhattan Plots

Download Detailed Table with Allele and Phenotype Information for SNP (Chr3: 2227817):

Change Y-Axis to -log10(p-value) (Strength of association) Change Y-Axis to R2 (Strength of LD)

Variant Effect Predictor (VEP) Effects (via ENSEMBL REST Services) (Chr3: 2227817)

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