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Overview
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Brief Summary
Experiment Type:
Genome-wide Association Study
Species:
Brachypodium distachyon
Dataset:
Subspecies A
Phenotype:
EUE2 2015 (ID: Bd108P57)
Algorithm:
EMMAX
Parameters:
MAF:
0.0
SNP Encoding:
Additive
Transformation:
None
Manhattan Plots
QQ-Plots
SNP Annotations
Summary/Downloads
GWAS Annotation Options
Multiple Correction Method
Bonferroni (FWER)
Storey & Tibishirani q-value (FDR)
Benjamini & Hochberg (FDR)
Benjamini, Hochberg & Yekutieli (FDR)
Significance level α
0.1
0.05
0.01
Number of SNPs per chromosome
10
25
50
100
200
500
Search Window around SNP
Within Gene
Within Gene + 1kb around Gene
Within Gene + 10kb around Gene
Within Gene + 100kb around Gene
Within Gene + 1000kb around Gene
Use only unique SNPs for Bonferroni threshold:
Top 10 SNP annotations for Chromosome 1
Top 10 SNP annotations for Chromosome 12
Top 10 SNP annotations for Chromosome 14
Top 10 SNP annotations for Chromosome 2
Top 10 SNP annotations for Chromosome 3
Top 10 SNP annotations for Chromosome 4
Top 10 SNP annotations for Chromosome 5