| General Information of GWAS |
| Project: | Massive haplotypes underlie ecotypic differentiation in sunflowers (Todesco et al., 2020): H. argophyllus | Experiment Type | Genome-wide Association Study |
| esayGWAS-ID: | 040fafc4-a06f-4066-9ac1-b951c8e0f608 | Owner: | RiesebergLab |
| Date Started: | March 22, 2020, 6:29 p.m. | Date Finished: | March 22, 2020, 6:52 p.m. |
| Selected Species: | Helianthus argophyllus |
| Selected Dataset: | H. argophyllus, SNPs remapped to HA412-HOv2 |
| Selected Gene Annotation Set: | HA412-HOv2 Eugene v1 |
| Selected SNPs: | All SNPs selected | MAF Filter: | 0.05 |
| SNP encoding: | Additive | Selected Principle Components: | 3 |
Selected Phenotype
| Phenotype Name: | Days to budding | Selected Transformation: | None |
| Selected Algorithm: | EMMAX | Histogram: |
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Algorithm Details
| Number of SNPs before Filtering: | 4676707 | Number of SNPs after Filtering: | 2226405 |
| Number of Samples before Filtering: | 279 | Number of Samples after Filtering: | 279 |
| AIC Null-Model: | 2387.37 | AICc Null-Model: | 2387.59 |
| BIC Null-Model: | 2405.52 | ||
| Variance Explained by the Null Model: | 0.69 |
Top 10 SNPs (Bonferroni Correction, 0.05)
