General Information of GWAS
Summary Statistics

General GWAS Summary
Project: Massive haplotypes underlie ecotypic differentiation in sunflowers (Todesco et al., 2020): H. annuus Experiment Type Genome-wide Association Study
Date Started:Sept. 26, 2019, 7:19 a.m.Date Finished:Sept. 26, 2019, 9:28 a.m.

Selected Species and Dataset
Selected Species: Helianthus annuus
Selected Dataset: wild Helianthus annuus, SNPs remapped to HA412
Selected Gene Annotation Set: HA412-HOv2 Eugene v1

Selected SNPs, Encodings and Filters
Selected SNPs: All SNPs selected MAF Filter:0.05
SNP encoding: Additive Selected Principle Components:3

Selected Phenotype
Phenotype Name: RGB proportion red Selected Transformation:None
Selected Algorithm: EMMAX Histogram:
Algorithm Details
Number of SNPs before Filtering: 4887920 Number of SNPs after Filtering:2673650
Number of Samples before Filtering: 596 Number of Samples after Filtering: 596
AIC Null-Model: -4253.30 AICc Null-Model:-4253.19
BIC Null-Model: -4231.34
Variance Explained by the Null Model: 0.22


authorstitlepub yearjournalvolumepagesdoi
Hyun Kang et al.Variance component model to account for sample structure in genome-wide association studies2010Nature Genetics42348-35410.1038/ng.548
Marco Todesco et al.Massive haplotypes underlie ecotypic differentiation in sunflowers2020NatureNAN-A10.1038/s41586-020-2467-6