| General Information of GWAS |
| Project: | Genome-wide association study of 107 phenotypes (Atwell et al.) | Experiment Type | Genome-wide Association Study |
| esayGWAS-ID: | 289a5493-32b3-428c-92ab-cc104d27d732 | Owner: | dgrimm |
| Date Started: | Sept. 30, 2014, 11:40 a.m. | Date Finished: | Sept. 30, 2014, 11:40 a.m. |
| Selected Species: | Arabidopsis thaliana |
| Selected Dataset: | AtPolyDB (call method 75, Horton et al.) |
| Selected Gene Annotation Set: | Gene Annotations (TAIR9) |
| Selected SNPs: | All SNPs selected | MAF Filter: | 0.1 |
| SNP encoding: | Additive | Selected Principle Components: | 0 |
Selected Phenotype
| Phenotype Name: | Trichome avg JA | Selected Transformation: | None |
| Selected Algorithm: | EMMAX | Histogram: |
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Algorithm Details
| Number of SNPs before Filtering: | 214051 | Number of SNPs after Filtering: | 175902 |
| Number of Samples before Filtering: | 94 | Number of Samples after Filtering: | 94 |
| AIC Null-Model: | 830.32 | AICc Null-Model: | 830.36 |
| BIC Null-Model: | 832.86 | ||
| Variance Explained by the Null Model: | 0.27 |
Top 10 SNPs (Bonferroni Correction, 0.05)
