| General Information of GWAS |
| Project: | Massive haplotypes underlie ecotypic differentiation in sunflowers (Todesco et al., 2020): H. argophyllus | Experiment Type | Genome-wide Association Study |
| esayGWAS-ID: | 32733001-a660-4e3b-9f28-9fcb6e2990ae | Owner: | RiesebergLab |
| Date Started: | Aug. 3, 2019, 12:54 a.m. | Date Finished: | Aug. 3, 2019, 1:21 a.m. |
| Selected Species: | Helianthus argophyllus |
| Selected Dataset: | H. argophyllus, SNPs remapped to HA412-HOv2 |
| Selected Gene Annotation Set: | HA412-HOv2 Eugene v1 |
| Selected SNPs: | All SNPs selected | MAF Filter: | 0.05 |
| SNP encoding: | Additive | Selected Principle Components: | 3 |
Selected Phenotype
| Phenotype Name: | Total RGB | Selected Transformation: | None |
| Selected Algorithm: | EMMAX | Histogram: |
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Algorithm Details
| Number of SNPs before Filtering: | 4676707 | Number of SNPs after Filtering: | 2210996 |
| Number of Samples before Filtering: | 285 | Number of Samples after Filtering: | 285 |
| AIC Null-Model: | 2484.03 | AICc Null-Model: | 2484.25 |
| BIC Null-Model: | 2502.29 | ||
| Variance Explained by the Null Model: | 4.0e-03 |
Top 10 SNPs (Bonferroni Correction, 0.05)
