General Information of GWAS
Summary Statistics

General GWAS Summary
Project: Massive haplotypes underlie ecotypic differentiation in sunflowers (Todesco et al., 2020): H. argophyllus Experiment Type Genome-wide Association Study
esayGWAS-ID:3345b1b7-2ea2-458b-afb9-b169a4bb6b3dOwner:RiesebergLab
Date Started:Aug. 3, 2019, 12:54 a.m.Date Finished:Aug. 3, 2019, 1:21 a.m.

Selected Species and Dataset
Selected Species: Helianthus argophyllus
Selected Dataset: H. argophyllus, SNPs remapped to HA412-HOv2
Selected Gene Annotation Set: HA412-HOv2 Eugene v1

Selected SNPs, Encodings and Filters
Selected SNPs: All SNPs selected MAF Filter:0.05
SNP encoding: Additive Selected Principle Components:3

Selected Phenotype
Phenotype Name: RGB proportion blue Selected Transformation:None
Selected Algorithm: EMMAX Histogram:
Algorithm Details
Number of SNPs before Filtering: 4676707 Number of SNPs after Filtering:2210996
Number of Samples before Filtering: 285 Number of Samples after Filtering: 285
AIC Null-Model: -1425.40 AICc Null-Model:-1425.18
BIC Null-Model: -1407.14
Variance Explained by the Null Model: 0.15

Publications


authorstitlepub yearjournalvolumepagesdoi
Hyun Kang et al.Variance component model to account for sample structure in genome-wide association studies2010Nature Genetics42348-35410.1038/ng.548
Marco Todesco et al.Massive haplotypes underlie ecotypic differentiation in sunflowers2020NatureNAN-A10.1038/s41586-020-2467-6