| General Information of GWAS |
| Project: | Massive haplotypes underlie ecotypic differentiation in sunflowers (Todesco et al., 2020): H. annuus | Experiment Type | Genome-wide Association Study |
| esayGWAS-ID: | 3b409781-6182-4bdd-9c5a-5d6cda01a084 | Owner: | RiesebergLab |
| Date Started: | Sept. 26, 2019, 7:56 a.m. | Date Finished: | Sept. 26, 2019, 10:13 a.m. |
| Selected Species: | Helianthus annuus |
| Selected Dataset: | wild Helianthus annuus, SNPs remapped to HA412 |
| Selected Gene Annotation Set: | HA412-HOv2 Eugene v1 |
| Selected SNPs: | All SNPs selected | MAF Filter: | 0.05 |
| SNP encoding: | Additive | Selected Principle Components: | 3 |
Selected Phenotype
| Phenotype Name: | Phyllaries LW ratio | Selected Transformation: | None |
| Selected Algorithm: | EMMAX | Histogram: |
|
Algorithm Details
| Number of SNPs before Filtering: | 4887920 | Number of SNPs after Filtering: | 2668231 |
| Number of Samples before Filtering: | 574 | Number of Samples after Filtering: | 574 |
| AIC Null-Model: | 942.30 | AICc Null-Model: | 942.40 |
| BIC Null-Model: | 964.06 | ||
| Variance Explained by the Null Model: | 0.10 |
Top 10 SNPs (Bonferroni Correction, 0.05)
