| General Information of GWAS |
| Project: | Genome-wide association study of 107 phenotypes (Atwell et al.) | Experiment Type | Genome-wide Association Study |
| esayGWAS-ID: | 5fe3d6c5-f010-4be0-812c-672463f3ad30 | Owner: | dgrimm |
| Date Started: | Sept. 30, 2014, 11:30 a.m. | Date Finished: | Sept. 30, 2014, 11:30 a.m. |
| Selected Species: | Arabidopsis thaliana |
| Selected Dataset: | AtPolyDB (call method 75, Horton et al.) |
| Selected Gene Annotation Set: | Gene Annotations (TAIR9) |
| Selected SNPs: | All SNPs selected | MAF Filter: | 0.1 |
| SNP encoding: | Additive | Selected Principle Components: | 0 |
Selected Phenotype
| Phenotype Name: | avrRpt2 | Selected Transformation: | None |
| Selected Algorithm: | EMMAX | Histogram: |
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Algorithm Details
| Number of SNPs before Filtering: | 214051 | Number of SNPs after Filtering: | 179235 |
| Number of Samples before Filtering: | 89 | Number of Samples after Filtering: | 89 |
| AIC Null-Model: | 77.65 | AICc Null-Model: | 77.69 |
| BIC Null-Model: | 80.14 | ||
| Variance Explained by the Null Model: | 0.12 |
Top 10 SNPs (Bonferroni Correction, 0.05)
