| General Information of GWAS |
| Project: | Massive haplotypes underlie ecotypic differentiation in sunflowers (Todesco et al., 2020): H. petiolaris petiolaris | Experiment Type | Genome-wide Association Study |
| esayGWAS-ID: | 65552f77-1ad5-47d5-8067-35307621b30f | Owner: | RiesebergLab |
| Date Started: | Aug. 9, 2019, 3:21 a.m. | Date Finished: | Aug. 9, 2019, 3:27 a.m. |
| Selected Species: | Helianthus petiolaris subsp. petiolaris |
| Selected Dataset: | Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2 |
| Selected Gene Annotation Set: | HA412-HOv2 Eugene v1 |
| Selected SNPs: | All SNPs selected | MAF Filter: | 0.05 |
| SNP encoding: | Additive | Selected Principle Components: | 3 |
Selected Phenotype
| Phenotype Name: | Seed shape index internal | Selected Transformation: | None |
| Selected Algorithm: | EMMAX | Histogram: |
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Algorithm Details
| Number of SNPs before Filtering: | 4640229 | Number of SNPs after Filtering: | 1449040 |
| Number of Samples before Filtering: | 141 | Number of Samples after Filtering: | 141 |
| AIC Null-Model: | -6.59 | AICc Null-Model: | -6.14 |
| BIC Null-Model: | 8.16 | ||
| Variance Explained by the Null Model: | 0.07 |
Top 10 SNPs (Bonferroni Correction, 0.05)
