General Information of GWAS
Summary Statistics

General GWAS Summary
Project: Linking genotype and phenotype in P. pacificus Experiment Type Genome-wide Association Study
esayGWAS-ID:a9de022e-644b-4e00-a4c7-fcead8b713e1Owner:dgrimm
Date Started:Oct. 26, 2015, 5:17 p.m.Date Finished:Oct. 26, 2015, 5:22 p.m.

Selected Species and Dataset
Selected Species: Pristionchus pacificus
Selected Dataset: Linking genotype and phenotype in P. pacificus (McGaughran et. al.)
Selected Gene Annotation Set: Linking genotype and phenotype in P. pacificus Gene Annotation Set

Selected SNPs, Encodings and Filters
Selected SNPs: All SNPs selected MAF Filter:0.1
SNP encoding: Additive Selected Principle Components:0
Used unique SNPs only to compute Realized Relationship Kernel:True

Selected Phenotype
Phenotype Name: pH 20 5 Selected Transformation:SQRT
Selected Algorithm: EMMAX Histogram:
Algorithm Details
Number of SNPs before Filtering: 2135350 Number of SNPs after Filtering:870876
Number of Samples before Filtering: 149 Number of Samples after Filtering: 149
AIC Null-Model: 315.42 AICc Null-Model:316.21
BIC Null-Model: 336.44
Variance Explained by the Null Model: 0.02

Publications


authorstitlepub yearjournalvolumepagesdoi
Hyun Kang et al.Variance component model to account for sample structure in genome-wide association studies2010Nature Genetics42348-35410.1038/ng.548
Angela McGaughran et al.Genomic Profiles of Diversification and Genotype–Phenotype Association in Island Nematode Lineages2016Mol Biol Evol332257-227210.1093/molbev/msw093