General Information of GWAS |
Project: | Massive haplotypes underlie ecotypic differentiation in sunflowers (Todesco et al., 2020): H. argophyllus | Experiment Type | Genome-wide Association Study |
esayGWAS-ID: | ab6d8ae8-9530-46d9-9ea6-442c044ef42e | Owner: | RiesebergLab |
Date Started: | Aug. 3, 2019, 6:23 a.m. | Date Finished: | Aug. 3, 2019, 6:48 a.m. |
Selected Species: | Helianthus argophyllus |
Selected Dataset: | H. argophyllus, SNPs remapped to HA412-HOv2 |
Selected Gene Annotation Set: | HA412-HOv2 Eugene v1 |
Selected SNPs: | All SNPs selected | MAF Filter: | 0.05 |
SNP encoding: | Additive | Selected Principle Components: | 3 |
Phenotype Name: | Leaf shape index external II | Selected Transformation: | None |
Selected Algorithm: | EMMAX | Histogram: |
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Number of SNPs before Filtering: | 4676707 | Number of SNPs after Filtering: | 2215871 |
Number of Samples before Filtering: | 286 | Number of Samples after Filtering: | 286 |
AIC Null-Model: | 165.83 | AICc Null-Model: | 166.04 |
BIC Null-Model: | 184.11 | ||
Variance Explained by the Null Model: | 0.02 |