| General Information of GWAS |
| Project: | Massive haplotypes underlie ecotypic differentiation in sunflowers (Todesco et al., 2020): H. petiolaris fallax | Experiment Type | Genome-wide Association Study |
| esayGWAS-ID: | afc34f9f-f8ea-4ef3-800a-b4533913273f | Owner: | RiesebergLab |
| Date Started: | June 18, 2019, 1:56 a.m. | Date Finished: | June 18, 2019, 2:06 a.m. |
| Selected Species: | Helianthus petiolaris subsp. fallax |
| Selected Dataset: | Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2 |
| Selected Gene Annotation Set: | HA412-HOv2 Eugene v1 |
| Selected SNPs: | All SNPs selected | MAF Filter: | 0.05 |
| SNP encoding: | Additive | Selected Principle Components: | 3 |
Selected Phenotype
| Phenotype Name: | DTF | Selected Transformation: | None |
| Selected Algorithm: | EMMAX | Histogram: |
|
Algorithm Details
| Number of SNPs before Filtering: | 4640229 | Number of SNPs after Filtering: | 1603605 |
| Number of Samples before Filtering: | 196 | Number of Samples after Filtering: | 196 |
| AIC Null-Model: | 1392.43 | AICc Null-Model: | 1392.74 |
| BIC Null-Model: | 1408.82 | ||
| Variance Explained by the Null Model: | 0.57 |
Top 10 SNPs (Bonferroni Correction, 0.05)
