| General Information of GWAS |
| Project: | Massive haplotypes underlie ecotypic differentiation in sunflowers (Todesco et al., 2020): H. annuus | Experiment Type | Genome-wide Association Study |
| esayGWAS-ID: | da19b27c-b860-46d0-b886-7bd3864c7f93 | Owner: | RiesebergLab |
| Date Started: | Sept. 25, 2019, 8:41 a.m. | Date Finished: | Sept. 25, 2019, 9:46 a.m. |
| Selected Species: | Helianthus annuus |
| Selected Dataset: | wild Helianthus annuus, SNPs remapped to HA412 |
| Selected Gene Annotation Set: | HA412-HOv2 Eugene v1 |
| Selected SNPs: | All SNPs selected | MAF Filter: | 0.05 |
| SNP encoding: | Additive | Selected Principle Components: | 3 |
Selected Phenotype
| Phenotype Name: | Seed perimeter | Selected Transformation: | None |
| Selected Algorithm: | EMMAX | Histogram: |
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Algorithm Details
| Number of SNPs before Filtering: | 4887920 | Number of SNPs after Filtering: | 2675632 |
| Number of Samples before Filtering: | 426 | Number of Samples after Filtering: | 426 |
| AIC Null-Model: | 1266.05 | AICc Null-Model: | 1266.19 |
| BIC Null-Model: | 1286.32 | ||
| Variance Explained by the Null Model: | 0.46 |
Top 10 SNPs (Bonferroni Correction, 0.05)
