| General Information of GWAS |
| Project: | Genome-wide association study of 107 phenotypes (Atwell et al.) | Experiment Type | Genome-wide Association Study |
| esayGWAS-ID: | e908dfaf-7f4c-4315-8951-35e8466772a1 | Owner: | dgrimm |
| Date Started: | Sept. 30, 2014, 11:30 a.m. | Date Finished: | Sept. 30, 2014, 11:30 a.m. |
| Selected Species: | Arabidopsis thaliana |
| Selected Dataset: | AtPolyDB (call method 75, Horton et al.) |
| Selected Gene Annotation Set: | Gene Annotations (TAIR9) |
| Selected SNPs: | All SNPs selected | MAF Filter: | 0.1 |
| SNP encoding: | Additive | Selected Principle Components: | 0 |
Selected Phenotype
| Phenotype Name: | avrRpm1 | Selected Transformation: | None |
| Selected Algorithm: | EMMAX | Histogram: |
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Algorithm Details
| Number of SNPs before Filtering: | 214051 | Number of SNPs after Filtering: | 174819 |
| Number of Samples before Filtering: | 84 | Number of Samples after Filtering: | 84 |
| AIC Null-Model: | 102.53 | AICc Null-Model: | 102.58 |
| BIC Null-Model: | 104.96 | ||
| Variance Explained by the Null Model: | 0.14 |
Top 10 SNPs (Bonferroni Correction, 0.05)
