General Information of GWAS
Summary Statistics

General GWAS Summary
Project: Population structure of the Brachypodium species complex and genome wide association of agronomic traits in response to climate Experiment Type Genome-wide Association Study
Date Started:Feb. 14, 2018, 3:40 a.m.Date Finished:Feb. 14, 2018, 3:42 a.m.

Selected Species and Dataset
Selected Species: Brachypodium distachyon
Selected Dataset: Subspecies A
Selected Gene Annotation Set: None

Selected SNPs, Encodings and Filters
Selected SNPs: All SNPs selected MAF Filter:0.0
SNP encoding: Additive Selected Principle Components:0

Selected Phenotype
Phenotype Name: Height 25Nov 2015 Selected Transformation:None
Selected Algorithm: EMMAX Histogram:
Algorithm Details
Number of SNPs before Filtering: 2057816 Number of SNPs after Filtering:1853843
Number of Samples before Filtering: 63 Number of Samples after Filtering: 63
AIC Null-Model: 166.09 AICc Null-Model:166.15
BIC Null-Model: 168.23
Variance Explained by the Null Model: 0.76


authorstitlepub yearjournalvolumepagesdoi
Hyun Kang et al.Variance component model to account for sample structure in genome-wide association studies2010Nature Genetics42348-35410.1038/ng.548