General Information of GWAS
Summary Statistics

General GWAS Summary
Project: Massive haplotypes underlie ecotypic differentiation in sunflowers (Todesco et al., 2020): H. argophyllus Experiment Type Genome-wide Association Study
esayGWAS-ID:f80efcde-782a-4124-9a1b-da48fdaa63b2Owner:RiesebergLab
Date Started:Aug. 3, 2019, 7:45 a.m.Date Finished:Aug. 3, 2019, 8:11 a.m.

Selected Species and Dataset
Selected Species: Helianthus argophyllus
Selected Dataset: H. argophyllus, SNPs remapped to HA412-HOv2
Selected Gene Annotation Set: HA412-HOv2 Eugene v1

Selected SNPs, Encodings and Filters
Selected SNPs: All SNPs selected MAF Filter:0.05
SNP encoding: Additive Selected Principle Components:3

Selected Phenotype
Phenotype Name: Leaf shape index internal Selected Transformation:None
Selected Algorithm: EMMAX Histogram:
Algorithm Details
Number of SNPs before Filtering: 4676707 Number of SNPs after Filtering:2215871
Number of Samples before Filtering: 286 Number of Samples after Filtering: 286
AIC Null-Model: 177.34 AICc Null-Model:177.55
BIC Null-Model: 195.62
Variance Explained by the Null Model: -5.1e-02

Publications


authorstitlepub yearjournalvolumepagesdoi
Hyun Kang et al.Variance component model to account for sample structure in genome-wide association studies2010Nature Genetics42348-35410.1038/ng.548
Marco Todesco et al.Massive haplotypes underlie ecotypic differentiation in sunflowers2020NatureNAN-A10.1038/s41586-020-2467-6