easyGWAS - Public Data

Phenotype ID	Phenotype Name	Scoring	variation type	#Samples
AT1P106	Seedling Growth	Seedling growth rate was given by leaf area divided by the number of days of growth since sowing ( in cm2/day)	continuous	100
AT_P_1	LD	Number of days following stratification to opening of first flower. The experiment was stopped at 200 d, and accessions that had not flowered at that point were assigned a value of 200	continuous	167
AT_P_10	Emwa1	All interactions were scored specifically on first true leaves as compatible, incompatible or intermediate depending on the consistency of presence / absence of sporangiophores determined on 5-10 seedlings of each genotype with three independent replications	binary	85
AT_P_11	Emoy*	All interactions were scored specifically on first true leaves as compatible, incompatible or intermediate depending on the consistency of presence / absence of sporangiophores determined on 5-10 seedlings of each genotype with three independent replications	binary	76
AT_P_12	Hiks1	All interactions were scored specifically on first true leaves as compatible, incompatible or intermediate depending on the consistency of presence / absence of sporangiophores determined on 5-10 seedlings of each genotype with three independent replications	binary	84
AT_P_13	Noco2	All interactions were scored specifically on first true leaves as compatible, incompatible or intermediate depending on the consistency of presence / absence of sporangiophores determined on 5-10 seedlings of each genotype with three independent replications	binary	87
AT_P_14	Li7	Lithium concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008	continuous	93
AT_P_15	B11	Boron concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008	continuous	93
AT_P_158	Silique 16	The length of 5 siliques was measured for each accession after growth had concluded	categorical	95
AT_P_159	Silique 22	The length of 5 siliques was measured for each accession after growth had concluded	categorical	95
AT_P_16	Na23	Sodium concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008	continuous	93
AT_P_161	Germ 10	Days to germination of each accession were recorded daily at each temperature upon first emergence of cotyledons	categorical	177
AT_P_162	Germ 16	Days to germination of each accession were recorded daily at each temperature upon first emergence of cotyledons	categorical	176
AT_P_163	Germ 22	Days to germination of each accession were recorded daily at each temperature upon first emergence of cotyledons	categorical	177
AT_P_164	Width 10	The diameters of 4 plants of each accession were measured and the results were expressed as an average value across all available replicates.Plants were scored 8 weeks post germination	continuous	176
AT_P_165	Width 16	The diameters of 4 plants of each accession were measured and the results were expressed as an average value across all available replicates.Plants were scored 5 weeks post germination	continuous	175
AT_P_166	Width 22	The diameters of 4 plants of each accession were measured and the results were expressed as an average value across all available replicates.Plants were scored 5 weeks post germination	continuous	175
AT_P_167	Chlorosis 10	Results expressed as binary data, determined by the presence (1) or absence (0) of chlorosis in all 4 plants / accession after 8wks of growth	binary	177
AT_P_168	Chlorosis 16	Results expressed as binary data, determined by the presence (1) or absence (0) of chlorosis in all 4 plants / accession after 5wks of growth	binary	176
AT_P_169	Chlorosis 22	Results expressed as binary data, determined by the presence (1) or absence (0) of chlorosis in all 4 plants / accession after 5wks of growth	binary	176
AT_P_17	Mg25	Magnesium concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008	continuous	93
AT_P_170	Anthocyanin 10	Results expressed as binary data, determined by the presence (1) or absence (0) of anthocyanin in all 4 plants / accession after 8wks of growth	binary	177
AT_P_171	Anthocyanin 16	Results expressed as binary data, determined by the presence (1) or absence (0) of anthocyanin in all 4 plants / accession after 5wks of growth	binary	176
AT_P_172	Anthocyanin 22	Results expressed as binary data, determined by the presence (1) or absence (0) of anthocyanin in all 4 plants / accession after 5wks of growth	binary	177
AT_P_173	Leaf serr 10	Average severity of serration across 4 plants was scored between 0 (entire lamina) and 1.5 (jagged serration) after 8 weeks of growth	categorical	174

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