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easyGWAS
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Overview
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Brief Summary
Experiment Type:
Genome-wide Association Study
Species:
Helianthus annuus
Dataset:
wild Helianthus annuus, SNPs remapped to HA412
Phenotype:
Trichomes lengt (ID: ANN rm218P176)
Algorithm:
EMMAX
Parameters:
MAF:
0.05
SNP Encoding:
Additive
Transformation:
None
Manhattan Plots
QQ-Plots
SNP Annotations
Summary/Downloads
GWAS Annotation Options
Multiple Correction Method
Bonferroni (FWER)
Storey & Tibishirani q-value (FDR)
Benjamini & Hochberg (FDR)
Benjamini, Hochberg & Yekutieli (FDR)
Significance level α
0.1
0.05
0.01
Number of SNPs per chromosome
10
25
50
100
200
500
Search Window around SNP
Within Gene
Within Gene + 1kb around Gene
Within Gene + 10kb around Gene
Within Gene + 100kb around Gene
Within Gene + 1000kb around Gene
Use only unique SNPs for Bonferroni threshold:
Top 10 SNP annotations for Chromosome Ha412HOChr01
Top 10 SNP annotations for Chromosome Ha412HOChr02
Top 10 SNP annotations for Chromosome Ha412HOChr03
Top 10 SNP annotations for Chromosome Ha412HOChr04
Top 10 SNP annotations for Chromosome Ha412HOChr05
Top 10 SNP annotations for Chromosome Ha412HOChr06
Top 10 SNP annotations for Chromosome Ha412HOChr07
Top 10 SNP annotations for Chromosome Ha412HOChr08
Top 10 SNP annotations for Chromosome Ha412HOChr09
Top 10 SNP annotations for Chromosome Ha412HOChr10
Top 10 SNP annotations for Chromosome Ha412HOChr11
Top 10 SNP annotations for Chromosome Ha412HOChr12
Top 10 SNP annotations for Chromosome Ha412HOChr13
Top 10 SNP annotations for Chromosome Ha412HOChr14
Top 10 SNP annotations for Chromosome Ha412HOChr15
Top 10 SNP annotations for Chromosome Ha412HOChr16
Top 10 SNP annotations for Chromosome Ha412HOChr17