| General Information of GWAS |
| Project: | Massive haplotypes underlie ecotypic differentiation in sunflowers (Todesco et al., 2020): H. petiolaris fallax | Experiment Type | Genome-wide Association Study |
| esayGWAS-ID: | 283768bd-16bd-4176-83c3-bb77eb346ebe | Owner: | RiesebergLab |
| Date Started: | Aug. 7, 2019, 2:51 a.m. | Date Finished: | Aug. 7, 2019, 3:01 a.m. |
| Selected Species: | Helianthus petiolaris subsp. fallax |
| Selected Dataset: | Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2 |
| Selected Gene Annotation Set: | HA412-HOv2 Eugene v1 |
| Selected SNPs: | All SNPs selected | MAF Filter: | 0.05 |
| SNP encoding: | Additive | Selected Principle Components: | 3 |
Selected Phenotype
| Phenotype Name: | RGB proportion blue | Selected Transformation: | None |
| Selected Algorithm: | EMMAX | Histogram: |
|
Algorithm Details
| Number of SNPs before Filtering: | 4640229 | Number of SNPs after Filtering: | 1568716 |
| Number of Samples before Filtering: | 200 | Number of Samples after Filtering: | 200 |
| AIC Null-Model: | -1063.18 | AICc Null-Model: | -1062.87 |
| BIC Null-Model: | -1046.69 | ||
| Variance Explained by the Null Model: | 0.12 |
Top 10 SNPs (Bonferroni Correction, 0.05)
