| General Information of GWAS |
| Project: | High temperature tolerance in Pristionchus pacificus | Experiment Type | Genome-wide Association Study |
| esayGWAS-ID: | ddd8ac3f-d31b-4c59-b492-11fc7ea70203 | Owner: | MLeaver |
| Date Started: | Oct. 4, 2016, 2:31 p.m. | Date Finished: | Oct. 4, 2016, 2:31 p.m. |
| Selected Species: | Pristionchus pacificus |
| Selected Dataset: | Htt_223_strains_unix |
| Selected Gene Annotation Set: | Linking genotype and phenotype in P. pacificus Gene Annotation Set |
| Selected SNPs: | All SNPs selected | MAF Filter: | 0.2 |
| SNP encoding: | Additive | Selected Principle Components: | 0 |
| Used unique SNPs only to compute Realized Relationship Kernel: | True |
Selected Phenotype
| Phenotype Name: | Htt 212 allclades | Selected Transformation: | None |
| Selected Algorithm: | EMMAX | Histogram: |
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Selected Covariates
| Covariate Name | Selected Transformation | Selected Algorithm | Histogram |
|---|---|---|---|
| beetle | None | EMMAX |
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| beetle | None | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
| beetle | None | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
| beetle | None | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
| beetle | Dummy Variables | EMMAX |
|
Algorithm Details
| Number of SNPs before Filtering: | 68144 | Number of SNPs after Filtering: | 4447 |
| Number of Samples before Filtering: | 211 | Number of Samples after Filtering: | 211 |
| AIC Null-Model: | 121.94 | AICc Null-Model: | 126.36 |
| BIC Null-Model: | 188.98 | ||
| Variance Explained by the Null Model: | 0.39 |
Top 10 SNPs (Bonferroni Correction, 0.05)
