| General Information of GWAS |
| Project: | Population structure of the Brachypodium species complex and genome wide association of agronomic traits in response to climate | Experiment Type | Genome-wide Association Study |
| esayGWAS-ID: | 9a472747-6126-4295-ba99-e4e8948c5e1f | Owner: | fergsc |
| Date Started: | Feb. 14, 2018, 5:02 a.m. | Date Finished: | Feb. 14, 2018, 5:05 a.m. |
| Selected Species: | Brachypodium distachyon |
| Selected Dataset: | Subspecies A |
| Selected Gene Annotation Set: | None |
| Selected SNPs: | All SNPs selected | MAF Filter: | 0.0 |
| SNP encoding: | Additive | Selected Principle Components: | 0 |
Selected Phenotype
| Phenotype Name: | NPQIntSlope 1 2050 | Selected Transformation: | None |
| Selected Algorithm: | EMMAX | Histogram: |
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Algorithm Details
| Number of SNPs before Filtering: | 2057816 | Number of SNPs after Filtering: | 1853843 |
| Number of Samples before Filtering: | 63 | Number of Samples after Filtering: | 63 |
| AIC Null-Model: | -579.36 | AICc Null-Model: | -579.30 |
| BIC Null-Model: | -577.22 | ||
| Variance Explained by the Null Model: | 0.49 |
Top 10 SNPs (Bonferroni Correction, 0.05)
